MarkovWeightedEFMs.jl

MarkovWeightedEFMs.jl is a package for computing EFM probabilities and weights for steady state metabolic flux networks.

Installation

To install this package, open a julia session and enter:

julia> ]
(@v1.6) pkg> add https://github.com/jchitpin/MarkovWeightedEFMs.jl.git

Usage

Once installed, the package is loaded in a julia session by typing:

julia> using MarkovWeightedEFMs

Note: the one plotting function in this package relies on the GLMakie backend. Errors with tree_plot() are probably related to OpenGL. See https://github.com/JuliaPlots/GLMakie.jl#troubleshooting-opengl for troubleshooting tips.

Citing MarkovWeightedEFMs.jl

Justin G Chitpin and Theodore J Perkins, A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks, biorXiv preprint biorXiv:2022.07.25.501464, doi: https://doi.org/10.1101/2022.07.25.501464, 2022.

License

This software is released under the MIT license.